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Add MaveDB filesource based on mavedb-fsspec#22576

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PlushZ wants to merge 4 commits intogalaxyproject:devfrom
PlushZ:add-mavedb-filesource
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Add MaveDB filesource based on mavedb-fsspec#22576
PlushZ wants to merge 4 commits intogalaxyproject:devfrom
PlushZ:add-mavedb-filesource

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@PlushZ PlushZ commented Apr 28, 2026

This PR adds a read-only MaveDB file source for Galaxy, backed by https://github.com/PlushZ/mavedb-fsspec.

The file source exposes public score sets under score-sets/ and, when a user provides a MaveDB API key, authenticated user score sets under my-score-sets/.

Available files per score set include:

scores.csv
counts.csv
variants.csv
metadata.json
mapped-variants.json

How to test the changes?

(Select all options that apply)

  • I've included appropriate automated tests.
  • This is a refactoring of components with existing test coverage.
  • Instructions for manual testing are as follows:
    1. [add testing steps and prerequisites here if you didn't write automated tests covering all your changes]

License

  • I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

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PlushZ commented Apr 29, 2026

currently mavedb-fsspec is under review by the MaveDB dev team

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